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<div class="title">moltk::Aligner::Cell Class Reference</div>  </div>
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<p>An <a class="el" href="classmoltk_1_1Aligner_1_1Cell.html" title="An Aligner::Cell is one node in the dynamic programming table.">Aligner::Cell</a> is one node in the dynamic programming table.  
 <a href="classmoltk_1_1Aligner_1_1Cell.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="Aligner_8hpp_source.html">Aligner.hpp</a>&gt;</code></p>

<p><a href="classmoltk_1_1Aligner_1_1Cell-members.html">List of all members.</a></p>
<table class="memberdecls">
<tr><td colspan="2"><h2><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top"><a class="el" href="classmoltk_1_1Aligner.html#adad98d3ee1780ac2f782bf87b466b55b">TracebackPointer</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classmoltk_1_1Aligner_1_1Cell.html#a46afa907bfe05f49dec3a49ec22cb9ef">compute_traceback_pointer</a> () const </td></tr>
<tr><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacemoltk_1_1units.html#a84d2541f1ab08c8ae38bea32fa7b33ca">moltk::units::Information</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classmoltk_1_1Aligner_1_1Cell.html#ad8b6f514f6420389c670370687518fb4">compute_v</a> () const </td></tr>
<tr><td colspan="2"><h2><a name="pub-attribs"></a>
Public Attributes</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacemoltk_1_1units.html#a84d2541f1ab08c8ae38bea32fa7b33ca">moltk::units::Information</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classmoltk_1_1Aligner_1_1Cell.html#aa766a462abc1caa6199a66ca3a37ca68">v</a></td></tr>
<tr><td class="mdescLeft">&#160;</td><td class="mdescRight">V, best score through this cell.  <a href="#aa766a462abc1caa6199a66ca3a37ca68"></a><br/></td></tr>
<tr><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacemoltk_1_1units.html#a84d2541f1ab08c8ae38bea32fa7b33ca">moltk::units::Information</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classmoltk_1_1Aligner_1_1Cell.html#ac66f132d15e84f948a4b041d78c56f03">g</a></td></tr>
<tr><td class="mdescLeft">&#160;</td><td class="mdescRight">G, best ungapped score through this cell.  <a href="#ac66f132d15e84f948a4b041d78c56f03"></a><br/></td></tr>
<tr><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacemoltk_1_1units.html#a84d2541f1ab08c8ae38bea32fa7b33ca">moltk::units::Information</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classmoltk_1_1Aligner_1_1Cell.html#abc2eef27dee7e7042069ea25c049dd5f">e</a></td></tr>
<tr><td class="mdescLeft">&#160;</td><td class="mdescRight">E, best score with gap in sequence 1.  <a href="#abc2eef27dee7e7042069ea25c049dd5f"></a><br/></td></tr>
<tr><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacemoltk_1_1units.html#a84d2541f1ab08c8ae38bea32fa7b33ca">moltk::units::Information</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classmoltk_1_1Aligner_1_1Cell.html#adbf73e205dd0a1ba60a232987058da50">f</a></td></tr>
<tr><td class="mdescLeft">&#160;</td><td class="mdescRight">F, best score with gap in sequence 2.  <a href="#adbf73e205dd0a1ba60a232987058da50"></a><br/></td></tr>
<tr><td colspan="2"><h2><a name="friends"></a>
Friends</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classmoltk_1_1Aligner_1_1Cell.html#a3b03e2ae2aae5a47673ad2bdb55375ce">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="classmoltk_1_1Aligner_1_1Cell.html">Cell</a> &amp;c)</td></tr>
</table>
<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
<div class="textblock"><p>An <a class="el" href="classmoltk_1_1Aligner_1_1Cell.html" title="An Aligner::Cell is one node in the dynamic programming table.">Aligner::Cell</a> is one node in the dynamic programming table. </p>
</div><hr/><h2>Member Function Documentation</h2>
<a class="anchor" id="a46afa907bfe05f49dec3a49ec22cb9ef"></a><!-- doxytag: member="moltk::Aligner::Cell::compute_traceback_pointer" ref="a46afa907bfe05f49dec3a49ec22cb9ef" args="() const " -->
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          <td class="memname"><a class="el" href="classmoltk_1_1Aligner.html#adad98d3ee1780ac2f782bf87b466b55b">TracebackPointer</a> moltk::Aligner::Cell::compute_traceback_pointer </td>
          <td>(</td>
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<a class="anchor" id="ad8b6f514f6420389c670370687518fb4"></a><!-- doxytag: member="moltk::Aligner::Cell::compute_v" ref="ad8b6f514f6420389c670370687518fb4" args="() const " -->
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          <td class="memname"><a class="el" href="namespacemoltk_1_1units.html#a84d2541f1ab08c8ae38bea32fa7b33ca">moltk::units::Information</a> moltk::Aligner::Cell::compute_v </td>
          <td>(</td>
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          <td> const</td>
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<hr/><h2>Friends And Related Function Documentation</h2>
<a class="anchor" id="a3b03e2ae2aae5a47673ad2bdb55375ce"></a><!-- doxytag: member="moltk::Aligner::Cell::operator&lt;&lt;" ref="a3b03e2ae2aae5a47673ad2bdb55375ce" args="(std::ostream &amp;os, const Cell &amp;c)" -->
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          <td class="memname">std::ostream&amp; operator&lt;&lt; </td>
          <td>(</td>
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          <td class="paramname"><em>os</em>, </td>
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        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">const <a class="el" href="classmoltk_1_1Aligner_1_1Cell.html">Cell</a> &amp;&#160;</td>
          <td class="paramname"><em>c</em>&#160;</td>
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          <td></td>
          <td>)</td>
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<div class="memdoc">

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<hr/><h2>Member Data Documentation</h2>
<a class="anchor" id="abc2eef27dee7e7042069ea25c049dd5f"></a><!-- doxytag: member="moltk::Aligner::Cell::e" ref="abc2eef27dee7e7042069ea25c049dd5f" args="" -->
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          <td class="memname"><a class="el" href="namespacemoltk_1_1units.html#a84d2541f1ab08c8ae38bea32fa7b33ca">moltk::units::Information</a> <a class="el" href="classmoltk_1_1Aligner_1_1Cell.html#abc2eef27dee7e7042069ea25c049dd5f">moltk::Aligner::Cell::e</a></td>
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<div class="memdoc">

<p>E, best score with gap in sequence 1. </p>

</div>
</div>
<a class="anchor" id="adbf73e205dd0a1ba60a232987058da50"></a><!-- doxytag: member="moltk::Aligner::Cell::f" ref="adbf73e205dd0a1ba60a232987058da50" args="" -->
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          <td class="memname"><a class="el" href="namespacemoltk_1_1units.html#a84d2541f1ab08c8ae38bea32fa7b33ca">moltk::units::Information</a> <a class="el" href="classmoltk_1_1Aligner_1_1Cell.html#adbf73e205dd0a1ba60a232987058da50">moltk::Aligner::Cell::f</a></td>
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<div class="memdoc">

<p>F, best score with gap in sequence 2. </p>

</div>
</div>
<a class="anchor" id="ac66f132d15e84f948a4b041d78c56f03"></a><!-- doxytag: member="moltk::Aligner::Cell::g" ref="ac66f132d15e84f948a4b041d78c56f03" args="" -->
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          <td class="memname"><a class="el" href="namespacemoltk_1_1units.html#a84d2541f1ab08c8ae38bea32fa7b33ca">moltk::units::Information</a> <a class="el" href="classmoltk_1_1Aligner_1_1Cell.html#ac66f132d15e84f948a4b041d78c56f03">moltk::Aligner::Cell::g</a></td>
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<div class="memdoc">

<p>G, best ungapped score through this cell. </p>

</div>
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<a class="anchor" id="aa766a462abc1caa6199a66ca3a37ca68"></a><!-- doxytag: member="moltk::Aligner::Cell::v" ref="aa766a462abc1caa6199a66ca3a37ca68" args="" -->
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          <td class="memname"><a class="el" href="namespacemoltk_1_1units.html#a84d2541f1ab08c8ae38bea32fa7b33ca">moltk::units::Information</a> <a class="el" href="classmoltk_1_1Aligner_1_1Cell.html#aa766a462abc1caa6199a66ca3a37ca68">moltk::Aligner::Cell::v</a></td>
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<div class="memdoc">

<p>V, best score through this cell. </p>

</div>
</div>
<hr/>The documentation for this class was generated from the following file:<ul>
<li>moltk/<a class="el" href="Aligner_8hpp_source.html">Aligner.hpp</a></li>
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